Transcriptomic Profiling Unravels Novel Deregulated Gene Signatures Associated with Acute Myocardial Infarction: A Bioinformatics Approach.
Sanjay KumarChun-Ming ShihLung-Wen TsaiRajni DubeyDeepika GuptaTanmoy ChakrabortyNaveen SharmaAbhishek Vikram SinghVishnu SwarupHimanshu Narayan SinghPublished in: Genes (2022)
Acute myocardial infarction (AMI) is a severe disease with elevated morbidity and mortality rate worldwide. This is attributed to great losses of cardiomyocytes, which can trigger the alteration of gene expression patterns. Although several attempts have been made to assess the AMI biomarkers, to date their role in rescuing myocardial injury remains unclear. Therefore, the current study investigated three independent microarray-based gene expression datasets from AMI patients (n = 85) and their age-sex-matched healthy controls (n = 70), to identify novel gene signatures that might be involved in cardioprotection. The differentially expressed genes (DEGs) were analyzed using 'GEO2R', and weighted gene correlation network analysis (WGCNA) was performed to identify biomarkers/modules. We found 91 DEGs, of which the number of upregulated and downregulated genes were 22 and 5, respectively. Specifically, we found that the deregulated genes such as ADOR-A3, BMP6, VPS8, and GPx3, may be associated with AMI. WGCNA revealed four highly preserved modules among all datasets. The 'Enrichr' unveiled the presence of miR-660 and STAT1, which is known to affect AMI severity. Conclusively, these genes and miRNA might play a crucial role the rescue of cardiomyocytes from severe damage, which could be helpful in developing appropriate therapeutic strategies for the management of AMI.
Keyphrases
- acute myocardial infarction
- genome wide
- genome wide identification
- network analysis
- dna methylation
- gene expression
- percutaneous coronary intervention
- copy number
- left ventricular
- genome wide analysis
- bioinformatics analysis
- single cell
- cell proliferation
- transcription factor
- end stage renal disease
- rna seq
- newly diagnosed
- chronic kidney disease
- early onset
- oxidative stress
- long non coding rna
- magnetic resonance imaging
- heart failure
- coronary artery disease
- mesenchymal stem cells
- acute coronary syndrome
- long noncoding rna
- mass spectrometry
- bone marrow
- single molecule
- high resolution
- drug induced