scGrapHiC: deep learning-based graph deconvolution for Hi-C using single cell gene expression.

Ghulam MurtazaByron ButaneyJustin WagnerRitambhara Singh

Published in: Bioinformatics (Oxford, England) (2024)

The GitHub link: https://github.com/rsinghlab/scGrapHiC contains the source code of scGrapHiC and associated scripts to preprocess publicly available datasets to produce the results and visualizations we have discuss in this manuscript.

Keyphrases

gene expression
deep learning
single cell
rna seq
convolutional neural network
dna methylation
artificial intelligence
high throughput
machine learning