cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board.

Arsenij UstjanzewAlexander DesukiChristoph RitzelAlina Corinna DolezilekDaniel-Christoph WagnerJan ChristophPhilipp UnberathThomas KindlerJörg FaberFederico MariniTorsten PanholzerClaudia Paret

Published in: BMC medical informatics and decision making (2021)

In summary, our package cbpManager is currently a unique software solution in the workflow with cBioPortal for Cancer Genomics, to assist the user in the interactive generation and management of study files suited for the later upload in cBioPortal.

Keyphrases

electronic health record
papillary thyroid
big data
squamous cell
copy number
machine learning
squamous cell carcinoma
genome wide
deep learning
solid state