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Structural and biochemical insights into Zn 2+ -bound EF-hand proteins, EFhd1 and EFhd2.

Sang A MunJongseo ParkJung Youn KangTaein ParkMinwoo JinJihyeong YangSoo Hyun Eom
Published in: IUCrJ (2023)
EF-hand proteins, which contain a Ca 2+ -binding EF-hand motif, are involved in regulating diverse cellular functions. Ca 2+ binding induces conformational changes that modulate the activities of EF-hand proteins. Moreover, these proteins occasionally modify their activities by coordinating metals other than Ca 2+ , including Mg 2+ , Pb 2+ and Zn 2+ , within their EF-hands. EFhd1 and EFhd2 are homologous EF-hand proteins with similar structures. Although separately localized within cells, both are actin-binding proteins that modulate F-actin rearrangement through Ca 2+ -independent actin-binding and Ca 2+ -dependent actin-bundling activity. Although Ca 2+ is known to affect the activities of EFhd1 and EFhd2, it is not known whether their actin-related activities are affected by other metals. Here, the crystal structures of the EFhd1 and EFhd2 core domains coordinating Zn 2+ ions within their EF-hands are reported. The presence of Zn 2+ within EFhd1 and EFhd2 was confirmed by analyzing anomalous signals and the difference between anomalous signals using data collected at the peak positions as well as low-energy remote positions at the Zn K-edge. EFhd1 and EFhd2 were also found to exhibit Zn 2+ -independent actin-binding and Zn 2+ -dependent actin-bundling activity. This suggests the actin-related activities of EFhd1 and EFhd2 could be regulated by Zn 2+ as well as Ca 2+ .
Keyphrases
  • heavy metals
  • cell migration
  • protein kinase
  • health risk assessment
  • high resolution
  • machine learning
  • mass spectrometry
  • transcription factor
  • big data
  • climate change
  • dna repair
  • deep learning
  • pi k akt