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Pickaxe: a Python library for the prediction of novel metabolic reactions.

Kevin M ShebekJonathan StrutzLinda J BroadbeltKeith E J Tyo
Published in: BMC bioinformatics (2023)
Pickaxe predicts novel metabolic reactions and compounds, which can be used for a variety of applications. This software is open-source and available as part of the MINE Database python package ( https://pypi.org/project/minedatabase/ ) or on GitHub ( https://github.com/tyo-nu/MINE-Database ). Documentation and examples can be found on Read the Docs ( https://mine-database.readthedocs.io/en/latest/ ). Through its documentation, pre-packaged features, and customizable nature, Pickaxe allows users to generate novel reaction networks tailored to their application.
Keyphrases
  • adverse drug
  • electronic health record
  • advance care planning