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Reinterpretation of Dynamic Vibrational Spectroscopy to Determine the Molecular Structure and Dynamics of Ferrocene.

Stephen Peter BestFeng WangM Tauhidul IslamShawkat IslamDominique AppadooRyan M TrevorahChristopher Thomas Chantler
Published in: Chemistry (Weinheim an der Bergstrasse, Germany) (2016)
Molecular distortion of dynamic molecules gives a clear signature in the vibrational spectra, which can be modeled to give estimates of the energy barrier and the sensitivity of the frequencies of the vibrational modes to the reaction coordinate. The reaction coordinate method (RCM) utilizes ab initio-calculated spectra of the molecule in its ground and transition states together with their relative energies to predict the temperature dependence of the vibrational spectra. DFT-calculated spectra of the eclipsed (D5h ) and staggered (D5d ) forms of ferrocene (Fc), and its deuterated analogue, within RCM explain the IR spectra of Fc in gas (350 K), solution (300 K), solid solution (7-300 K), and solid (7-300 K) states. In each case the D5h rotamer is lowest in energy but with the barrier to interconversion between rotamers higher for solution-phase samples (ca. 6 kJ mol-1 ) than for the gas-phase species (1-3 kJ mol-1 ). The generality of the approach is demonstrated with application to tricarbonyl(η4 -norbornadiene)iron(0), Fe(NBD)(CO)3 . The temperature-dependent coalescence of the ν(CO) bands of Fe(NBD)(CO)3 is well explained by the RCM without recourse to NMR-like rapid exchange. The RCM establishes a clear link between the calculated ground and transition states of dynamic molecules and the temperature-dependence of their vibrational spectra.
Keyphrases
  • density functional theory
  • molecular dynamics
  • solid state
  • high resolution
  • single molecule
  • magnetic resonance
  • mass spectrometry
  • molecular dynamics simulations
  • raman spectroscopy
  • quantum dots
  • carbon dioxide