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Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.

James D McKayRayjean J HungYounghun HanXuchen ZongRobert Carreras-TorresDavid C ChristianiNeil E CaporasoMattias JohanssonXiangjun XiaoYafang LiJinyoung ByunAlison DunningKaren A PooleyDavid C QianXuemei JiGeoffrey LiuMaria N TimofeevaStig E BojesenXifeng WuLoic Le MarchandDemetrios AlbanesHeike BickeböllerMelinda C AldrichWilliam S BushAdonina TardonGad RennertM Dawn TeareJohn K FieldLambertus A KiemeneyPhilip LazarusAage HaugenStephen LamMatthew B SchabathAngeline S AndrewHongbing ShenYun-Chul HongJian-Min YuanPier Alberto BertazziAngela Cecilia PesatoriYuanqing YeNancy DiaoLi SuRuyang ZhangYonathan BrhaneNatasha LeighlJakob S JohansenAnders MellemgaardWalid SalibaChristopher A HaimanLynne R WilkensAna Fernandez-SomoanoGuillermo Fernandez-TardonErik H F M van der HeijdenJin Hee KimJuncheng DaiZhibin HuMichael P A DaviesMichael W MarcusHans BrunnströmJonas ManjerOlle MelanderDavid C MullerKim OvervadAntonia TrichopoulouRosario TuminoJennifer A DohertyMatt P BarnettChu ChenGary E GoodmanAngela CoxFiona TaylorPenella J WollIrene BrüskeH-Erich WichmannJudith ManzThomas R MuleyAngela RischAlbert RosenbergerKjell GrankvistMikael JohanssonFrances A ShepherdMing-Sound TsaoSusanne M ArnoldEric B HauraCiprian BolcaIvana HolcatovaVladimir JanoutMilica KonticJolanta LissowskaAnush MukeriaSimona OgnjanovicTadeusz M OrlowskiGhislaine SceloBeata SwiatkowskaDavid ZaridzePer BakkeVidar SkaugShanbeh ZienolddinyEric J DuellLesley M ButlerWoon-Puay KohYu-Tang GaoRichard S HoulstonJohn McLaughlinVictoria L StevensPhilippe JoubertMaxime LamontagneDavid C NickleMa'en ObeidatHidde J HaismaBin ZhuLei SongLinda KachuriMaría Soler ArtigasMartin D TobinLouise V Wainnull nullThorunn RafnarThorgeir E ThorgeirssonGunnar W ReginssonKari StefanssonDana B HancockLaura J BierutMargaret R SpitzNathan C GaddisSharon M LutzFangyi GuEric O JohnsonAhsan KamalClaudio PikielnyDakai ZhuSara LindströemXia JiangRachel F TyndaleGeorgia Chenevix-TrenchJonathan BeesleyYohan BosseStephen ChanockPaul BrennanMaria Teresa LandiChristopher I Amos
Published in: Nature genetics (2017)
Although several lung cancer susceptibility loci have been identified, much of the heritability for lung cancer remains unexplained. Here 14,803 cases and 12,262 controls of European descent were genotyped on the OncoArray and combined with existing data for an aggregated genome-wide association study (GWAS) analysis of lung cancer in 29,266 cases and 56,450 controls. We identified 18 susceptibility loci achieving genome-wide significance, including 10 new loci. The new loci highlight the striking heterogeneity in genetic susceptibility across the histological subtypes of lung cancer, with four loci associated with lung cancer overall and six loci associated with lung adenocarcinoma. Gene expression quantitative trait locus (eQTL) analysis in 1,425 normal lung tissue samples highlights RNASET2, SECISBP2L and NRG1 as candidate genes. Other loci include genes such as a cholinergic nicotinic receptor, CHRNA2, and the telomere-related genes OFBC1 and RTEL1. Further exploration of the target genes will continue to provide new insights into the etiology of lung cancer.
Keyphrases
  • genome wide
  • genome wide association study
  • dna methylation
  • gene expression
  • copy number
  • genome wide association
  • single cell
  • high resolution
  • machine learning
  • electronic health record
  • big data