The influence of Na diffusion from various glass substrates during a high-temperature slenization process on the microstructure and morphology of two-step formed CIGS absorber layers is investigated. In order to minimise the CIGS absorber formation time, elemental Se vapour is used to prepare the CIGS absorber. The grain sizes of the CIGS films are found to increase with increasing sodium in the glass substrates (extra clear glass, soda-lime glass, borosilicate glass). TiN and SiN thin films are used as diffusion barrier layers inserted between the glass substrate and the Mo rear conatct to tune the Na diffusion from the soda-lime glass. The interdiffusion between the In-rich CuInSe2 surface layer and the Ga-rich CuGaSe2 layer is promoted by the barrier layer, leading to larger CIGS grains. Efforts are also taken to understand the differences in Na diffusion (from the glass substrates) and their effects on the MoSe2 intermediate layer formation during the high-temperature CIGS absorber formation processes. We find that excess amounts of Na and Se are essential for the MoSe2 growth. The excessive Na in the form of Na2Sex at the CIGS/Mo interface works as a Se source and catalyses the MoSe2 formation. The Se flow in the two-step CIGS formation process must be sufficiently high to obtain high-efficiency CIGS solar cells.