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GRcalculator: an online tool for calculating and mining dose-response data.

Nicholas A ClarkMarc HafnerMichal KourilElizabeth H WilliamsJeremy L MuhlichMarcin PilarczykMario NiepelPeter K SorgerMario Medvedovic
Published in: BMC cancer (2017)
GRcalculator is a powerful, user-friendly, and free tool to facilitate analysis of dose-response data. It generates publication-ready figures and provides a unified platform for investigators to analyze dose-response data across diverse cell types and perturbagens (including drugs, biological ligands, RNAi, etc.). GRcalculator also provides access to data collected by the NIH LINCS Program ( http://www.lincsproject.org /) and other public domain datasets. The GRmetrics Bioconductor package provides computationally trained users with a platform for offline analysis of dose-response data and facilitates inclusion of GR metrics calculations within existing R analysis pipelines. These tools are therefore well suited to users in academia as well as industry.
Keyphrases
  • electronic health record
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  • mental health
  • mesenchymal stem cells
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  • machine learning
  • density functional theory
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