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SUMA: a lightweight machine learning model-powered shared nearest neighbour-based clustering application interface for scRNA-Seq data.

Hamza Umut KarakurtPınar Pir
Published in: Turkish journal of biology = Turk biyoloji dergisi (2023)
We developed and evaluated the SUMA model and implemented the method in the SUMAShiny app, which integrates SUMA with different clustering methods and enables nonbioinformatician users to cluster and visualise their scRNA data easily. The SUMAShiny app is available both for desktop and browser use.
Keyphrases
  • machine learning
  • single cell
  • rna seq
  • big data
  • electronic health record
  • genome wide
  • dna methylation
  • deep learning