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xcore: an R package for inference of gene expression regulators.

Maciej MigdałTakahiro ArakawaSatoshi TakizawaMasaaki FurunoHarukazu SuzukiErik ArnerCecilia Lanny WinataBogumił Kaczkowski
Published in: BMC bioinformatics (2023)
xcore provides a simple analytical framework for gene expression modeling using linear models that can be easily incorporated into differential expression analysis pipelines. Taking advantage of public ChIP-seq databases, xcore can identify meaningful molecular signatures and relevant ChIP-seq experiments.
Keyphrases
  • gene expression
  • genome wide
  • single cell
  • dna methylation
  • high throughput
  • rna seq
  • circulating tumor cells
  • healthcare
  • transcription factor
  • mental health
  • liquid chromatography
  • emergency department
  • mass spectrometry