Novel mutation in alpha-spectrin gene in Saudi patients with hereditary spherocytosis.
Ahmad AlshomarAhmed A AhmedZafar RasheedFahad A AlhumaydhiSuliman AlsagabyAbdullah S M AljohaniAbdullah S AlkhamissRuqaih AlghshamSami A AlthwabMuhammad Ismail KhanNelson FernándezWaleed Al AbdulmonemPublished in: Nucleosides, nucleotides & nucleic acids (2024)
Hereditary spherocytosis (HS) is the most common hereditary hemolytic disorder induced by red blood cell (RBC) membrane defect. This study was undertaken to determine mutations in genes associated with RBC membrane defect in patients with HS such as α-spectrin gene (SPTA1), β-spectrin gene (SPTB), ankyrin gene (ANK1), band 3 anion transport gene (SLC4A1) and erythrocyte membrane protein band 4.1 gene (EPB41). Blood samples were collected from 23 unrelated patients with HS. Patients were diagnosed according to the guidelines from the British Society for Hematology. All hematological examinations for the determination of RBC abnormalities and osmotic fragility tests were conducted. Genomic DNA were extracted from peripheral blood cells and coding exons of known genes for hereditary spherocytosis were enriched using Roche/KAPA sequence capture technology and sequenced on an Illumina system via next-generation sequencing (NGS). The data showed that most of the HS patients confirmed splenomegaly and showed elevated reticulocytes and abnormal bilirubin values. NGS analysis identified the heterozygous variant c.5501G > A in the exon 39 of SPTA1 gene, resulted in a Trp1834*, which leads to a premature stop codon and subsequent mRNA degradation (nonsense- mediated decay) or truncation in α spectrin. Moreover, our data also revealed conventional mutations in genes SPTB, ANK, SLC4A1 and EBP41 in severe patients of HS. In short, this is the first report that determined a novel mutation c.5501G > A in SPTA1 gene in the Saudi population. To the best of our knowledge, this variant c.5501G > A has not been described in global literature so far. This novel mutation in SPTA1 gene is unique in the Saudi population.
Keyphrases
- copy number
- genome wide
- genome wide identification
- end stage renal disease
- red blood cell
- ejection fraction
- newly diagnosed
- peripheral blood
- chronic kidney disease
- dna methylation
- peritoneal dialysis
- healthcare
- systematic review
- gene expression
- early onset
- machine learning
- big data
- cell proliferation
- clinical practice
- mass spectrometry
- cell death
- deep learning
- ionic liquid
- saudi arabia
- single molecule
- amino acid