Cellular proliferation biases clonal lineage tracing and trajectory inference.
Becca Bonham-CarterGeoffrey SchiebingerPublished in: Bioinformatics (Oxford, England) (2024)
Source code for the simulated datasets and to create the figures in this manuscript is freely available in python at https://github.com/rbonhamcarter/simulate-clones. A python implementation of the extension of the LineageOT method is freely available at https://github.com/rbonhamcarter/LineageOT/tree/multi-time-clones.