qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE).

Nanette ChristieChanaka MannapperumaRaphael PloyetKaren van der MerweNiklas MählerNicolas DelhommeSanushka NaidooEshchar MizrachiNathaniel R StreetAlexander A Myburg

Published in: BMC bioinformatics (2021)

qtlXplorer adds a new dimension, population genomics, to the EucGenIE and PlantGenIE environment. The resource will be of interest to researchers and molecular breeders working in Eucalyptus and other woody plant species. It provides an example of how systems genetics data can be integrated with functional genetics data to provide biological insight and formulate hypotheses. Importantly, integration within PlantGenIE enables novel comparative genomics analyses to be performed from population-scale data.

Keyphrases

electronic health record
big data
single cell
data analysis
gene expression
machine learning
essential oil