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Binding of carboxylate and trimethylammonium salts to octa-acid and TEMOA deep-cavity cavitands.

Matthew R SullivanPunidha SokkalingamThong NguyenJames P DonahueAnthony Wishard
Published in: Journal of computer-aided molecular design (2016)
In participation of the fifth statistical assessment of modeling of proteins and ligands (SAMPL5), the strength of association of six guests (3-8) to two hosts (1 and 2) were measured by 1H NMR and ITC. Each host possessed a unique and well-defined binding pocket, whilst the wide array of amphiphilic guests possessed binding moieties that included: a terminal alkyne, nitro-arene, alkyl halide and cyano-arene groups. Solubilizing head groups for the guests included both positively charged trimethylammonium and negatively charged carboxylate functionality. Measured association constants (K a ) covered five orders of magnitude, ranging from 56 M-1 for guest 6 binding with host 2 up to 7.43 × 106 M-1 for guest 6 binding to host 1.
Keyphrases
  • water soluble
  • dna binding
  • high resolution
  • binding protein
  • magnetic resonance
  • physical activity
  • mass spectrometry
  • optic nerve
  • high density
  • optical coherence tomography