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Characterisation of the RNA Virome of Nine Ochlerotatus Species in Finland.

Phuoc Thien Truong NguyenC Lorna CulverwellMaija T SuvantoEssi M KorhonenRuut UusitaloOlli VapalahtiTeemu SmuraEili Huhtamo
Published in: Viruses (2022)
RNA viromes of nine commonly encountered Ochlerotatus mosquito species collected around Finland in 2015 and 2017 were studied using next-generation sequencing. Mosquito homogenates were sequenced from 91 pools comprising 16-60 morphologically identified adult females of Oc. cantans , Oc. caspius , Oc. communis , Oc. diantaeus , Oc. excrucians , Oc. hexodontus , Oc. intrudens , Oc. pullatus and Oc. punctor / punctodes . In total 514 viral Reverse dependent RNA polymerase (RdRp) sequences of 159 virus species were recovered, belonging to 25 families or equivalent rank, as follows: Aliusviridae , Aspiviridae , Botybirnavirus , Chrysoviridae , Chuviridae , Endornaviridae , Flaviviridae , Iflaviridae , Negevirus , Partitiviridae , Permutotetraviridae , Phasmaviridae , Phenuiviridae , Picornaviridae , Qinviridae , Quenyavirus , Rhabdoviridae , Sedoreoviridae , Solemoviridae , Spinareoviridae , Togaviridae , Totiviridae , Virgaviridae , Xinmoviridae and Yueviridae . Of these, 147 are tentatively novel viruses. One sequence of Sindbis virus , which causes Pogosta disease in humans, was detected from Oc. communis from Pohjois-Karjala. This study greatly increases the number of mosquito-associated viruses known from Finland and presents the northern-most mosquito-associated viruses in Europe to date.
Keyphrases
  • aedes aegypti
  • dengue virus
  • genetic diversity
  • sars cov
  • copy number
  • nucleic acid