A large-scale machine learning analysis of inorganic nanoparticles in preclinical cancer research.
Bárbara B MendesZilu ZhangJoão ConniotDiana Pacheco SousaJoão M J M RavascoLauren A OnwellerAndżelika LorencTiago RodriguesDaniel RekerJoão CondePublished in: Nature nanotechnology (2024)
Owing to their distinct physical and chemical properties, inorganic nanoparticles (NPs) have shown promising results in preclinical cancer therapy, but designing and engineering them for effective therapeutic purposes remains a challenge. Although a comprehensive database of inorganic NP research is not currently available, it is crucial for developing effective cancer therapies. In this context, machine learning (ML) has emerged as a transformative tool, but its adaptation to nanomedicine is hindered by inexistent or small datasets. Here we assembled a large database of inorganic NPs, comprising experimental datasets from 745 preclinical studies in cancer nanomedicine. Using descriptive statistics and explainable ML models we mined this database to gain knowledge of inorganic NP design patterns and inform future NP research for cancer treatment. Our analyses suggest that NP shape and therapy type are prominent features in determining in vivo efficacy, measured as a percentage of tumour reduction. Moreover, our database provides a large-scale open-access resource for discriminative ML that the broader nanotechnology community can utilize. Our work blueprints data mining for translational cancer research and offers evidence for standardizing NP reporting to accelerate and de-risk inorganic NP-based drug delivery, which may help to improve patient outcomes in clinical settings.
Keyphrases
- papillary thyroid
- cancer therapy
- machine learning
- drug delivery
- squamous cell
- adverse drug
- healthcare
- water soluble
- lymph node metastasis
- squamous cell carcinoma
- cell therapy
- perovskite solar cells
- physical activity
- emergency department
- minimally invasive
- big data
- childhood cancer
- rna seq
- smoking cessation
- electronic health record
- single cell
- bone marrow