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Association analyses identify 31 new risk loci for colorectal cancer susceptibility.

Philip J LawMaria N TimofeevaCeres Fernández-RozadillaPeter BroderickJames B StuddJuan Fernandez-TajesSusan M FarringtonVictoria SvintiClaire PallesGiulia OrlandoAmit SudAmy HolroydSteven PenegarEvropi TheodoratouPeter Vaughan-ShawHarry CampbellLina ZgagaCaroline HaywardArchie I CampbellSarah HarrisIan J DearyJohn StarrLaura GatcombeMaria PinnaSarah BriggsLynn MartinEmma JaegerArchana Sharma-OatesJames Edward EastSimon LeedhamRoland ArnoldElaine JohnstoneHaitao WangDavid KerrRachel KerrTim MaughanRichard S KaplanNada A Al-TassanKimmo PalinUlrika A HänninenTatiana CajusoTomas TanskanenJohanna KondelinEevi KaasinenAntti-Pekka SarinJohan G ErikssonHarri RissanenPaul KnektEero PukkalaPekka JousilahtiVeikko V SalomaaSamuli RipattiAarno PalotieLaura Renkonen-SinisaloAnna LepistöJan BöhmJukka-Pekka MecklinDaniel D BuchananAung-Ko WinJohn HopperMark E JenkinsNoralane M LindorPolly A NewcombSteven GallingerDavid DugganGraham CaseyPer HoffmannMarkus M NöthenKarl-Heinz JöckelDouglas F EastonPaul David Peter PharoahJulian PetoFederico CanzianAnthony SwerdlowRosalind A EelesZsofia Kote-JaraiKenneth Ross MuirNora Pashayannull nullAndrea HarkinKaren AllanJohn McQueenJames PaulTimothy IvesonMark SaundersKatja ButterbachJenny Chang-ClaudeMichael HoffmeisterHermann BrennerIva KiracPetar MatoševićPhilipp HoferStefanie BrezinaAndrea GsurJeremy P CheadleLauri A AaltonenIan P M TomlinsonRichard S HoulstonMalcolm G Dunlop
Published in: Nature communications (2019)
Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention.
Keyphrases
  • genome wide
  • genome wide association
  • dna methylation
  • gene expression
  • copy number
  • stem cells
  • cell proliferation
  • molecular docking