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Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline.

Yash PatelChenghao ZhuTakafumi N YamaguchiNicholas K WangNicholas WiltsieAlfredo E GonzalezHelena K WinataNicole ZeltserYu PanMohammed Faizal Eeman MootorTimothy SandersCyriac KandothSorel T Fitz-GibbonJulie LivingstoneLydia Y LiuBenjamin CarlinAaron HolmesJieun OhJohn M SahrmannShu TaoStefan E EngRupert Hugh-WhiteKiarod PashminehazarAndrew ParkArpi BeshlikyanMadison JordanSelina WuMao TianJaron ArbetBeth K NeilsenYuan Zhe BughGina KimJoseph SalmingoWenshu ZhangRoni HaasAakarsh AnandEdward HwangAnna Neiman-GoldenPhilippa SteinbergWenyan ZhaoPrateek AnandBrandon L TsaiPaul C Boutros
Published in: bioRxiv : the preprint server for biology (2024)
Metapipeline-DNA is an open-source Nextflow pipeline under the GPLv2 license and is freely available at https://github.com/uclahs-cds/metapipeline-DNA .
Keyphrases
  • circulating tumor
  • cell free
  • single molecule
  • copy number
  • circulating tumor cells
  • gene expression
  • dna repair
  • visible light