TahcoRoll: fast genomic signature profiling via thinned automaton and rolling hash.

Chelsea J-T JuJyun-Yu JiangRuirui LiZeyu LiWei Wang

Published in: Medical review (Berlin, Germany) (2022)

The single-thread version of TahcoRoll is as efficient as the eight-thread version of the state-of-the-art, JellyFish, while the eight-thread TahcoRoll outperforms the eight-thread JellyFish by at least four times.

Keyphrases

psychometric properties
copy number
gene expression
dna methylation
genome wide