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A deep convolutional neural network for segmentation of whole-slide pathology images identifies novel tumour cell-perivascular niche interactions that are associated with poor survival in glioblastoma.

Amin Zadeh ShiraziMark D McDonnellEric FornaciariNarjes Sadat BagherianKaitlin G ScheerMichael Susithiran SamuelMahdi YaghoobiRebecca J OrmsbySantosh PoonooseDamon J TumesGuillermo A Gomez
Published in: British journal of cancer (2021)
This work identified key histopathological features that correlate with patient survival and detected spatially associated genetic signatures that contribute to tumour-stroma interactions and which should be investigated as new targets in glioblastoma. The source codes and datasets used are available in GitHub: https://github.com/amin20/GBM_WSSM .
Keyphrases
  • convolutional neural network
  • deep learning
  • genome wide
  • free survival
  • single cell
  • dna methylation
  • case report
  • cell therapy
  • rna seq
  • machine learning
  • stem cells
  • copy number
  • gene expression
  • single molecule