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Broad-coverage biomedical relation extraction with SemRep.

Halil KilicogluGraciela RosemblatMarcelo FiszmanDongwook Shin
Published in: BMC bioinformatics (2020)
SemRep is a broad-coverage, interpretable, strong baseline system for extracting semantic relations from biomedical text. It also underpins SemMedDB, a literature-scale knowledge graph based on semantic relations. Through SemMedDB, SemRep has had significant impact in the scientific community, supporting a variety of clinical and translational applications, including clinical decision making, medical diagnosis, drug repurposing, literature-based discovery and hypothesis generation, and contributing to improved health outcomes. In ongoing development, we are redesigning SemRep to increase its modularity and flexibility, and addressing weaknesses identified in the error analysis.
Keyphrases
  • healthcare
  • systematic review
  • decision making
  • small molecule
  • affordable care act
  • mental health
  • emergency department
  • smoking cessation
  • deep learning
  • drug induced
  • electronic health record