Login / Signup

Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion.

David StrelakAmaya Jiménez-MorenoJosé L VilasErney Ramírez-AportelaRuben Sánchez-GarcíaDavid MaluendaJavier VargasDavid HerrerosEstrella Fernández-GiménezFederico Pedro de Isidro-GómezJan HoracekDavid MyskaMartin HoracekPablo ConesaYunior C Fonseca-ReynaJorge JiménezMarta MartínezMohamad HarastaniSlavica JonicJiri FilipovicRoberto MarabiniJosé M CarazoCarlos Oscar S Sorzano
Published in: Molecules (Basel, Switzerland) (2021)
Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology, although with contributions from many other developers over the world. During its 25 years of existence, Xmipp underwent multiple changes and updates. While there were many publications related to new programs and functionality added to Xmipp, there is no single publication on the Xmipp as a package since 2013. In this article, we give an overview of the changes and new work since 2013, describe technologies and techniques used during the development, and take a peek at the future of the package.
Keyphrases
  • electron microscopy
  • public health
  • big data
  • electronic health record
  • current status
  • data analysis
  • quality improvement
  • machine learning
  • deep learning