Towards real-time STEM simulations through targeted subsampling strategies.
Alex W RobinsonJack WellsDaniel NichollsAmirafshar MoshtaghpourMiaofang ChiAngus I KirklandNigel D BrowningPublished in: Journal of microscopy (2023)
Scanning transmission electron microscopy images can be complex to interpret on the atomic scale as the contrast is sensitive to multiple factors such as sample thickness, composition, defects and aberrations. Simulations are commonly used to validate or interpret real experimental images, but they come at a cost of either long computation times or specialist hardware such as graphics processing units. Recent works in compressive sensing for experimental STEM images have shown that it is possible to significantly reduce the amount of acquired signal and still recover the full image without significant loss of image quality, and therefore it is proposed here that similar methods can be applied to STEM simulations. In this paper, we demonstrate a method that can significantly increase the efficiency of STEM simulations through a targeted sampling strategy, along with a new approach to independently subsample each frozen phonon layer. We show the effectiveness of this method by simulating a SrTiO 3 grain boundary and monolayer 2H-MoS 2 containing a sulphur vacancy using the abTEM software. We also show how this method is not limited to only traditional multislice methods, but also increases the speed of the PRISM simulation method. Furthermore, we discuss the possibility for STEM simulations to seed the acquisition of real data, to potentially lead the way to self-driving (correcting) STEM.
Keyphrases
- deep learning
- molecular dynamics
- electron microscopy
- optical coherence tomography
- monte carlo
- image quality
- convolutional neural network
- systematic review
- computed tomography
- magnetic resonance
- magnetic resonance imaging
- machine learning
- dna methylation
- artificial intelligence
- electronic health record
- high resolution
- room temperature
- gold nanoparticles
- virtual reality