Login / Signup

Polarizable continuum models provide an effective electrostatic embedding model for fragment-based chemical shift prediction in challenging systems.

Pablo A UnzuetaGregory J O Beran
Published in: Journal of computational chemistry (2020)
Ab initio nuclear magnetic resonance chemical shift prediction provides an important tool for interpreting and assigning experimental spectra, but it becomes computationally prohibitive in large systems. The computational costs can be reduced considerably by fragmentation of the large system into a series of contributions from many smaller subsystems. However, the presence of charged functional groups and the need to partition the system across covalent bonds create complications in biomolecules that typically require the use of large fragments and careful descriptions of the electrostatic environment. The present work shows how a model that combines chemical shielding contributions from non-overlapping monomer and dimer fragments embedded in a polarizable continuum model provides a simple, easy-to-implement, and computationally inexpensive approach for predicting chemical shifts in complex systems. The model's performance proves rather insensitive to the continuum dielectric constant, making the selection of the optimal embedding dielectric less critical. The PCM-embedded fragment model is demonstrated to perform well across systems ranging from molecular crystals to proteins.
Keyphrases
  • magnetic resonance
  • molecular dynamics simulations
  • magnetic resonance imaging
  • computed tomography
  • mass spectrometry
  • density functional theory
  • single molecule
  • tandem mass spectrometry