Pyroptosis-Related Gene Model Predicts Prognosis and Immune Microenvironment for Non-Small-Cell Lung Cancer.
Lian-Xiang LuoXinyue YaoJing XiangPublished in: Oxidative medicine and cellular longevity (2022)
Non-small-cell lung cancer (NSCLC) has a high incidence and mortality worldwide. Moreover, it needs more accurate means for predicting prognosis and treatments. Pyroptosis is a novel form of cell death about inflammation which was highly related to the occurrence and development of tumors. Despite having some studies about pyroptosis-related genes (PRGs) and cancer, the correlation has not been explored enough between PRGs and immune in NSCLC. In this study, we constructed a PRG model by WGCNA to access the prognosis value PRGs have. The testing cohort ( n = 464) with four datasets from the GEO database conducted a survival analysis to confirm the stability of the prognostic model. The risk score and age are examined as independent prognostic factors. Based on the PRGs, we found multiple pathways enriched in immune in NSCLC. Separating samples into three subtypes by consensus cluster analysis, Cluster 3 was identified as immune-inflamed phenotype with an optimistic prognostic outcome. A three-gene PRG signature (BNIP3, CASP9, and CAPN1) was identified, and BNIP3 was identified as the core gene. Knockdown of BNIP3 significantly inhibited the growth of H358 cells and induced pyroptosis. In conclusion, the model construction based on PRGs provides novel insights into the prediction of NSCLC prognosis, and BNIP3 can serve as a diagnostic biomarker for NSCLC.
Keyphrases
- small cell lung cancer
- advanced non small cell lung cancer
- prognostic factors
- cell death
- nlrp inflammasome
- genome wide
- copy number
- risk factors
- stem cells
- oxidative stress
- brain metastases
- type diabetes
- emergency department
- risk assessment
- cell cycle arrest
- gene expression
- squamous cell carcinoma
- cardiovascular events
- dna methylation
- high resolution
- mass spectrometry
- epidermal growth factor receptor
- coronary artery disease
- endoplasmic reticulum stress
- high glucose
- squamous cell
- data analysis
- free survival
- lymph node metastasis