Role of protein interactions in stabilizing canonical DNA features in simulations of DNA in crowded environments.
Asli YildirimNathalie BrennerRobert SutherlandMichael F FeigPublished in: BMC biophysics (2018)
The overall conclusion is that crowding effects may stabilize the canonical features of DNA that are most important for biological function. The results are complementary to a previous study of DNA in reduced dielectric environments where reduced dielectric environments alone led to a conformational shift towards A-DNA. Such a shift was not observed here suggested that the reduced dielectric response of cellular environments is counteracted by non-specific interactions with protein crowders under in vivo conditions.