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Role of protein interactions in stabilizing canonical DNA features in simulations of DNA in crowded environments.

Asli YildirimNathalie BrennerRobert SutherlandMichael Feig
Published in: BMC biophysics (2018)
The overall conclusion is that crowding effects may stabilize the canonical features of DNA that are most important for biological function. The results are complementary to a previous study of DNA in reduced dielectric environments where reduced dielectric environments alone led to a conformational shift towards A-DNA. Such a shift was not observed here suggested that the reduced dielectric response of cellular environments is counteracted by non-specific interactions with protein crowders under in vivo conditions.
Keyphrases
  • circulating tumor
  • single molecule
  • cell free
  • molecular dynamics
  • nucleic acid
  • circulating tumor cells
  • protein protein
  • binding protein
  • molecular dynamics simulations