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Intra-strand phosphate-mediated pathways in microsolvated double-stranded DNA.

Georgia PolycarpouSpiros S Skourtis
Published in: Journal of physics. Condensed matter : an Institute of Physics journal (2024)
We argue that dry DNA charge transport in molecular junctions, over distances of tens of nanometers, can take place via independent intra-strand pathways involving the phosphate groups. Such pathways explain recent single-molecule experiments that compare currents in intact and nicked 100 base-pair double-stranded DNA. We explore the conditions that favor independent intra-strand transport channels with the participation of the phosphate groups, as opposed to purely base mediated transport involving the pi-stacked bases and inter-strand transitions. Our computations demonstrate how long-distance transport pathways in DNA are tuned by the degree of solvation, which affects the level of dynamic disorder in the pi-stacking, and the energies of phosphate-group molecular orbitals.
Keyphrases
  • single molecule
  • living cells
  • atomic force microscopy
  • circulating tumor
  • cell free
  • binding protein
  • density functional theory
  • nucleic acid
  • ionic liquid
  • circulating tumor cells