Complete Circular Genome Sequence of a Multidrug-Resistant Escherichia coli Strain from Cuba Obtained with Nanopore and Illumina Hybrid Assembly.
Rosa Elena Hernández-FillorMichael BrilhanteIvette EspinosaVincent PerretenPublished in: Microbiology resource announcements (2019)
The complete genome sequence of a multidrug-resistant Escherichia coli strain isolated from a healthy pig in Cuba was determined using short and long reads. This strain carried four plasmids, including a 42,683-kb IncX1 plasmid, which contains the third-generation cephalosporin resistance gene bla CTX-M-32 together with other disinfectant and antibiotic resistance genes.
Keyphrases
- klebsiella pneumoniae
- multidrug resistant
- escherichia coli
- gram negative
- antibiotic resistance genes
- drug resistant
- acinetobacter baumannii
- microbial community
- wastewater treatment
- copy number
- biofilm formation
- genome wide
- anaerobic digestion
- single molecule
- crispr cas
- cystic fibrosis
- pseudomonas aeruginosa
- high throughput sequencing
- genome wide analysis
- solid state