PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management.
Nils PaulheCécile CanletAnnelaure DamontLindsay PeyrigaStéphanie DurandCatherine DebordeSandra AlvesStephane BernillonThierry BertonRaphael BirAlyssa BouvilleEdern CahoreauDelphine CentenoRobin CostantinoLaurent DebrauwerAlexis DelabrièreChristophe DuperierSylvain EmeryAmelie FlandinUlli HohenesterDaniel JacobCharlotte JolyCyril JousseMarie LagreeNadia LamariMarie LefebvreClaire Lopez-PiffetBernard LyanMickael MaucourtCarole MigneMarie-Francoise OlivierEstelle Rathahao-ParisPierre PetriacqJulie PinelliLéa RochPierrick RogerSimon RoquesJean-Claude TabetMarie Tremblay-FrancoMounir TraïkiaAnna WarnetVanessa ZhendreDominique RolinFabien JourdanEtienne ThévenotAnnick MoingEmilien JaminFrançois FenailleChristophe JunotEstelle Pujos-GuillotFranck GiacomoniPublished in: Metabolomics : Official journal of the Metabolomic Society (2022)
PeakForest is a comprehensive resource which addresses a technical bottleneck, namely large-scale spectral data annotation and metabolite identification for metabolomics laboratories with multiple instruments. PeakForest databases can be used in conjunction with bespoke data analysis pipelines in the Galaxy environment, offering the opportunity to meet the evolving needs of metabolomics research. Developed and tested by the French metabolomics community, PeakForest is freely-available at https://github.com/peakforest .