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Computational prediction of changes in brain metabolic fluxes during Parkinson's disease from mRNA expression.

Farahaniza SupandiJohannes H G M van Beek
Published in: PloS one (2018)
Our method predicts metabolic changes from gene expression data that correspond in direction and order of magnitude with presently available experimental observations during Parkinson's disease, indicating that the hypothesis may be useful for some biochemical pathways. Lsei-FBA generates predictions of flux distributions in neurons and small brain regions for which accurate metabolic flux measurements are not yet possible.
Keyphrases
  • gene expression
  • resting state
  • white matter
  • spinal cord
  • functional connectivity
  • high resolution
  • electronic health record
  • blood brain barrier
  • brain injury
  • deep learning