An Insight into the Structural Requirements and Pharmacophore Identification of Carbonic Anhydrase Inhibitors to Combat Oxidative Stress at High Altitudes: An In-Silico Approach.
Amena AliAbuzer AliMusarrat Husain WarsiMohammad Akhlaquer RahmanMohamed Jawed AhsanFaizul AzamPublished in: Current issues in molecular biology (2022)
Carbonic anhydrases (CA) inhibitory action could be linked to the treatment of a number of ailments, including cancer, osteoporosis, glaucoma, and several neurological problems. For the development of effective CA inhibitors, a variety of heterocyclic rings have been investigated. Furthermore, at high altitudes, oxygen pressure drops, resulting in the formation of reactive oxygen and nitrogen species, and CA inhibitors having role in combating this oxidative stress. Acetazolamide contains thiadiazole ring, which has aroused researchers' interest because of its CA inhibitory action. In the present study, we used a number of drug design tools, such as pharmacophore modeling, 3D QSAR, docking, and virtual screening on twenty-seven 1,3,4-thiadiazole derivatives that have been described as potential CA inhibitors in the literature. An atom-based 3D-QSAR analysis was carried out to determine the contribution of individual atoms to model generation, while a pharmacophore mapping investigation was carried out to find the common unique pharmacophoric properties required for biological activity. The coefficient of determination for both the training and test sets were statistically significant in the generated model. The best QSAR model was chosen based on the values of R 2 (0.8757) and Q 2 (0.7888). A molecular docking study was also conducted against the most potent analogue 4m , which has the highest SP docking score (-5.217) (PDB ID: 6g3v). The virtual screening revealed a number of promising compounds. The screened compound ZINC77699643 interacted with the amino acid residues, Pro201 and Thr199, in the virtual screening study (PDB ID: 6g3v). These interactions demonstrated the significance of the CA inhibitory activity of the compound. Furthermore, ADME study revealed useful information regarding compound's drug-like properties. Therefore, the findings of the present investigation could aid in the development of more potent CA inhibitors, which could benefit the treatment of oxidative stress at high altitudes.
Keyphrases
- molecular docking
- molecular dynamics
- oxidative stress
- molecular dynamics simulations
- systematic review
- ischemia reperfusion injury
- squamous cell carcinoma
- emergency department
- dna damage
- mental health
- signaling pathway
- mass spectrometry
- computed tomography
- protein kinase
- healthcare
- high resolution
- magnetic resonance imaging
- body composition
- papillary thyroid
- single molecule
- health information
- young adults
- subarachnoid hemorrhage
- tandem mass spectrometry
- solid phase extraction