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HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment.

Jordi AbanteNoushin GhaffariCharles D JohnsonAniruddha Datta
Published in: BMC genomics (2017)
Our methodology provides an individual quality metric per contig in addition to an overall genome assembly score, with a time complexity well below that of an aligner. Ultimately, HiMMe provides meaningful statistical insights that can be leveraged by researchers to better select contigs and genome assemblies for downstream analysis.
Keyphrases
  • genome wide
  • data analysis
  • clinical evaluation