msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data.

Heesun KimMikang SimNayoung ParkKisang KwonJunyoung KimJae Bum Kim

Published in: BMC bioinformatics (2022)

msPIPE is a new end-to-end pipeline designed for methylation calling, profiling, and various types of downstream DNA methylation analyses, leading to the creation of publication-quality figures. msPIPE allows researchers to process and analyze the WGBS data in an easy and convenient way. It is available at https://github.com/jkimlab/msPIPE and https://hub.docker.com/r/jkimlab/mspipe .

Keyphrases

dna methylation
electronic health record
genome wide
single cell
big data
gene expression
machine learning
quality improvement
network analysis
artificial intelligence
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