Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.).

Guangyan FengLei XuJianping WangGang NieBradley Shaun BushmanWengang XieHaidong YanZhongfu YangHao GuanLinkai HuangXinquan Zhang

Published in: BMC genomics (2018)

Five hub genes, c136110_g1 (BRI1), c131375_g1 (BZR1), c133350_g1 (VRN1), c139830_g1 (VIN3), and c125792_g2 (FT), might play central roles in vernalization response. Our comprehensive analyses have provided a useful platform for investigating consecutive transcriptional and post-transcriptional regulation of critical phases in D. glomerata and provided insights into the genetic engineering of flowering-control in cereal crops.

Keyphrases

genome wide
single cell
transcription factor
bioinformatics analysis
gene expression
dna methylation
rna seq
network analysis
high throughput
copy number
genome wide identification
arabidopsis thaliana
oxidative stress
genome wide analysis