Carbazole appended trans -dicationic pyridinium porphyrin finds supremacy in DNA binding/photocleavage over a non-carbazolyl analogue.
Athulya DasThasnim P MohammedRajesh KumarSarmistha BhuniaMuniyandi SankaralingamPublished in: Dalton transactions (Cambridge, England : 2003) (2022)
A carbazolyl appended trans -pyridyl porphyrin (1) was synthesized and its dicationic form 2 was obtained by methylation of the pyridyl group. Copper and zinc complexes of porphyrin 2 (Cu(II), 3; Zn(II), 4) were isolated and characterized by various modern spectroscopic techniques. The DNA binding properties of 2, 3, and 4 have been explored against calf thymus-DNA (CT-DNA). DNA binding was quantized using the intrinsic binding constant ( K b ) that was calculated by UV-visible absorption spectroscopy, and the value K b = 1.6 × 10 6 M -1 for compound 2 reveals a better interaction of 2 towards CT-DNA than those of 3 (3.1 × 10 5 M -1 ) and 4 (3.4 × 10 5 M -1 ), which follows the order 2 > 4 > 3. The fluorescence quenching efficiency and ethidium bromide quenching assay also indicated a good binding affinity of all the compounds towards CT-DNA. Furthermore, the spectroscopic data suggest that the possible mode of interaction is intercalation. The docking studies were in accordance with the experimental results. Notably, DNA cleavage studies reveal that 2 shows better damage than 3 and 4 which is in accordance with the binding affinity order 2 > 4 > 3. The observed quantum yield (2: 0.65, 3: 0.33, and 4: 0.97) and no change in DNA cleavage in the presence of NaN 3 reveal the involvement of singlet oxygen. The singlet excited state lifetimes were in the range of 6.3-1.2 ns. Furthermore, these porphyrins can be investigated as interesting photosensitizers in photodynamic therapy and photochemotherapy.
Keyphrases
- dna binding
- photodynamic therapy
- single molecule
- circulating tumor
- transcription factor
- cell free
- energy transfer
- computed tomography
- nucleic acid
- genome wide
- image quality
- contrast enhanced
- molecular docking
- fluorescence imaging
- dna methylation
- atomic force microscopy
- ionic liquid
- dual energy
- oxidative stress
- gene expression
- machine learning
- positron emission tomography
- high throughput
- oxide nanoparticles
- metal organic framework
- risk assessment
- magnetic resonance
- high resolution
- heavy metals
- small molecule
- molecular dynamics simulations
- quantum dots