MiR-26a-5p as a Reference to Normalize MicroRNA qRT-PCR Levels in Plasma Exosomes of Pediatric Hematological Malignancies.
Carlotta C DamantiEnrico GaffoFederica LovisaAnna GarbinPiero Di BattistaIlaria GallinganiAnna TosatoMarta PillonElisa CarraroMaurizio MascarinCaterina EliaAlessandra BiffiStefania BortoluzziLara MussolinPublished in: Cells (2021)
Plasma exosomal microRNAs (miRNAs) are considered as valid circulating biomarkers for cancer diagnosis and prognosis. Quantitative real-time polymerase chain reaction (qRT-PCR), the most commonly used technique to assess circulating miRNA levels, requires a normalization step involving uniformly expressed endogenous miRNAs. However, there is still no consensus on reference miRNAs for plasma exosomal miRNA abundance normalization. In this study, we identified a panel of miRNAs with stable abundance by analyzing public plasma exosome RNA-seq data and selected miR-486-5p, miR-26a-5p, miR-423-5p and miR191-5p as candidate normalizers. Next, we tested the abundance variation of these miRNAs by qRT-PCR in plasma exosomes of healthy donors and pediatric patients with anaplastic large cell lymphoma, Burkitt lymphoma, Hodgkin lymphoma and mature B-cell acute lymphoblastic leukemia. MiR-486-5p and miR-26a-5p showed the most stable levels, both between healthy controls and patients and among the malignancies analyzed. In light of previous reports on miRNA stability in different exosome isolation methods, our data indicated that miR-26a-5p is a bona fide reference miRNA for qRT-PCR normalization to evaluate miRNA abundance from circulating plasma exosomes in studies of hematological malignancies.
Keyphrases
- rna seq
- acute lymphoblastic leukemia
- single cell
- mesenchymal stem cells
- stem cells
- hodgkin lymphoma
- antibiotic resistance genes
- end stage renal disease
- diffuse large b cell lymphoma
- chronic kidney disease
- electronic health record
- squamous cell carcinoma
- real time pcr
- prognostic factors
- bone marrow
- artificial intelligence
- cell therapy
- wastewater treatment
- lymph node metastasis
- data analysis
- anaerobic digestion