This study aimed to understand the sources and transport mechanism of organic matter (OM) in the Ganges-Brahmaputra-Meghna (GBM) river system in Bangladesh. We conducted analyses of total organic carbon (TOC), total nitrogen (TN), their stable isotopes (δ 13 C and δ 15 N), and sediment grain size. The results reveal a heterogeneous mixture of OM derived from terrestrial plants, aquatic environments, and anthropogenic sources. The Brahmaputra River exhibited higher concentrations of TOC and TN, with δ 13 C and δ 15 N values indicating that the OM is primarily sourced from C 3 plants. Conversely, the Ganges River demonstrated lower TOC levels and higher isotopic values, reflecting significant anthropogenic inputs. The Lower Meghna showed a mixture of terrestrial and marine sources. Variations in the TOC/TN ratios across the river system underscore the complex interplay between natural and anthropogenic factors. Additionally, sediment grain size plays a crucial role, with finer sediments in the Brahmaputra River associated with increased OM concentrations, while coarser sediments in the Ganges River correlate with lower TOC and TN levels.