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Structurally different chemical chaperones show similar mechanical roles with independent molecular mechanisms.

Deep ChaudhuriDebojyoti ChowdhurySoham ChakrabortyMadhu BhattRudranil ChowdhuryAakashdeep DuttaAyush MistryShubhasis Haldar
Published in: Nanoscale (2024)
Osmolytes are well known to protect the protein structure against different chemical and physical denaturants. Since their actions with protein surfaces are mechanistically complicated and context dependent, the underlying molecular mechanism is not fully understood. Here, we combined single-molecule magnetic tweezers and molecular dynamics (MD) simulation to explore the mechanical role of osmolytes from two different classes, trimethylamine N -oxide (TMAO) and trehalose, as mechanical stabilizers of protein structure. We observed that these osmolytes increase the protein L mechanical stability by decreasing unfolding kinetics while accelerating the refolding kinetics under force, eventually shifting the energy landscape toward the folded state. These osmolytes mechanically stabilize the protein L and plausibly guide them to more thermodynamically robust states. Finally, we observed that osmolyte-modulated protein folding increases mechanical work output up to twofold, allowing the protein to fold under a higher force regime and providing a significant implication for folding-induced structural stability in proteins.
Keyphrases
  • single molecule
  • molecular dynamics
  • protein protein
  • amino acid
  • staphylococcus aureus
  • atomic force microscopy
  • oxidative stress
  • endothelial cells
  • pseudomonas aeruginosa
  • biofilm formation