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Stabilization of 3 10 -Helices in Macrocycles Using Dominant Rotor Methodology.

Martynas J ŠirvinskasGeorge J SaundersMonica MitracheAndrei K Yudin
Published in: Journal of the American Chemical Society (2024)
Stabilization of biologically relevant structural motifs has been a long-standing challenge. Here we show that atropisomeric dominant rotors can stabilize rare 3 10 -helices in macrocycles. The target molecules were prepared using solid-phase peptide synthesis and subjected to extensive structural analysis. Molecular dynamics (MD) simulations enabled us to acquire solution structures for the target molecules, which offered evidence for stable 3 10 -helix formation, ordinarily a metastable state. The 3 10 -helices were shown to retain helicity after heating to 100 °C for 72 h. Moreover, the crude atropisomeric mixtures could be thermally enriched toward 3 10 -helical macrocycles with selectivities of >20:1.
Keyphrases
  • molecular dynamics
  • density functional theory
  • high resolution
  • ionic liquid
  • dna binding
  • mass spectrometry
  • light emitting