smsMap: mapping single molecule sequencing reads by locating the alignment starting positions.

Published in: BMC bioinformatics (2020)

smsMap is computationally efficient to align SMS reads, especially for the larger size of the reference genome (e.g., H. sapiens genome with over 3 billion base pairs). The source code of smsMap can be freely downloaded from https://github.com/NWPU-903PR/smsMap .

Keyphrases

single molecule
atomic force microscopy
living cells
genome wide
single cell
dna methylation
fluorescent probe