Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks.

Arnaud CeolPiero MontanariIlaria BartoliniStefano CeriPaolo CiacciaMarco PatellaMarco Masseroli

Published in: BMC bioinformatics (2020)

The novel SimSearch method provides innovative support for effective genome-wide pattern search and visualization; its relevance and practical usefulness is demonstrated through a number of significant use cases of biological interest. The SimSearch IGB plugin, documentation, and code are freely available at https://deib-geco.github.io/simsearch-app/ and https://github.com/DEIB-GECO/simsearch-app/ .

Keyphrases

genome wide
copy number
dna methylation
machine learning
electronic health record
deep learning
advance care planning
clinical evaluation