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The Chromatin Regulator HMGA1a Undergoes Phase Separation in the Nucleus.

Hongjia ZhuMasako NaritaJerelle A JosephGeorg KrainerWilliam E ArterIoana OlanKadi L SaarNiklas ErmannJorge R EspinosaYi ShenMasami Ando KuriRunzhang QiTimothy J WelshRosana Collepardo-GuevaraMasashi NaritaTuomas P J Knowles
Published in: Chembiochem : a European journal of chemical biology (2022)
The protein high mobility group A1 (HMGA1) is an important regulator of chromatin organization and function. However, the mechanisms by which it exerts its biological function are not fully understood. Here, we report that the HMGA isoform, HMGA1a, nucleates into foci that display liquid-like properties in the nucleus, and that the protein readily undergoes phase separation to form liquid condensates in vitro. By bringing together machine-leaning modelling, cellular and biophysical experiments and multiscale simulations, we demonstrate that phase separation of HMGA1a is promoted by protein-DNA interactions, and has the potential to be modulated by post-transcriptional effects such as phosphorylation. We further show that the intrinsically disordered C-terminal tail of HMGA1a significantly contributes to its phase separation through electrostatic interactions via AT hooks 2 and 3. Our work sheds light on HMGA1 phase separation as an emergent biophysical factor in regulating chromatin structure.
Keyphrases
  • transcription factor
  • gene expression
  • dna damage
  • genome wide
  • protein protein
  • amino acid
  • binding protein
  • ionic liquid
  • deep learning
  • machine learning
  • molecular dynamics simulations