Viral coinfection analysis using a MinHash toolkit.

Eric T DawsonSarah WagnerDavid RobersonMeredith YeagerJoseph BolandErik GarrisonStephen ChanockMark SchiffmanTina Raine-BennettThomas LoreyPhillip E CastleLisa MirabelloRichard Durbin

Published in: BMC bioinformatics (2019)

Accurate read classification enables estimates of percent composition when there are multiple infecting lineages or sublineages. While we demonstrate rkmh for HPV with multiple sequencing technologies, it is also applicable to other mixtures of related sequences.

Keyphrases

machine learning
deep learning
sars cov
single cell
high grade
high resolution
ionic liquid
single molecule
mass spectrometry
drug induced
genetic diversity