Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California.

Arun Sethuraman Rosalina Stancheva Ciara Sanders Lakme CaceresDavid CastroHannah Hausknecht-Buss Simone Henry Haven Johansen Antolette Kasler Sandy Lastor Isabelle Massaro Immanuel Mekuria Andrea Moron-SolanoNiki ReadGretchen L Vengerova Andrew Zhang Grigory V Zyryanov Betsy Read

Published in: G3 (Bethesda, Md.) (2022)

Here, we report the discovery of a novel Sediminibacterium sequenced from laboratory cultures of freshwater stream cyanobacteria from sites in Southern California, grown in BG11 medium. Our genome-wide analyses reveal a highly contiguous and complete genome (97% BUSCO) that is placed within sediminibacterial clades in phylogenomic analyses. Functional annotation indicates the presence of genes that could be involved in mutualistic/commensal relationship with associated cyanobacterial hosts.

Keyphrases

genome wide
dna methylation
copy number
small molecule
high throughput
gene expression
single cell
transcription factor