hictk: blazing fast toolkit to work with .hic and .cool files.

Published in: Bioinformatics (Oxford, England) (2024)

The hictk library, Python bindings and CLI tools are released under the MIT license as a multi-platform application available at github.com/paulsengroup/hictk. Pre-built binaries for Linux and macOS are available on bioconda. Python bindings for hictk are available on GitHub at github.com/paulsengroup/hictkpy, while R bindings are available on GitHub at github.com/paulsengroup/hictkR.

Keyphrases

high throughput
single cell