Expression Analysis of Circular RNAs in Young and Sexually Mature Boar Testes.
Fei ZhangXiaodong ZhangWei NingXiangdong ZhangZhenyuan RuShiqi WangMei ShengJunrui ZhangXueying ZhangHaiqin LuoXin WangZu-Bing CaoYun-Hai ZhangPublished in: Animals : an open access journal from MDPI (2021)
Testicular development is critical for male animals' reproduction and is tightly regulated by epigenetic factors. Circular RNAs (circRNAs) were recently identified in the testes of humans and bulls. However, the expression profile of circRNAs and their potential biological functions in boar testicular development remain unclear. We identified 34,521 and 31,803 circRNAs in piglet (30 d) and adult (210 d) boar testes by high-throughput sequencing, respectively. Bioinformatics analysis revealed that these circRNAs are widely distributed on autosomes and sex chromosomes. Some of the host genes can generate multiple circRNAs. A total of 2326 differentially expressed circRNAs (DECs) derived from 1526 host genes was found in testicular development, of which 1003 circRNAs were up-regulated in adult boar testes and 1323 circRNAs were down-regulated. Furthermore, gene ontology analysis of host genes of DECs revealed that these circRNAs are mainly involved in regulating spermatogenesis, cilia motility, and hormone biosynthesis. The Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis revealed that the DECs are markedly enriched to stem cell pluripotency regulation, tight junctions, adhesion junctions, and cAMP signaling pathway. These results indicate that circRNAs are abundantly expressed in boar testes and exhibit dynamic changes during testicular development.
Keyphrases
- bioinformatics analysis
- genome wide identification
- genome wide
- signaling pathway
- stem cells
- transcription factor
- germ cell
- dna methylation
- single cell
- genome wide analysis
- risk assessment
- single molecule
- staphylococcus aureus
- pseudomonas aeruginosa
- biofilm formation
- copy number
- pi k akt
- climate change
- escherichia coli
- cell wall