Illumina short read-based shotgun metagenomic data sets of simulated bacterial communities derived from fresh spinach and surface water.
Zhao ChenJianghong MengPublished in: Microbiology resource announcements (2024)
Paired-end short reads of Illumina HiSeq, MiSeq, and NovaSeq of simulated bacterial communities from fresh spinach and surface water were generated in silico at various sequencing depths. Multidrug-resistant Salmonella enterica serotype Indiana was included in the spinach community, while the water community contained multidrug-resistant Pseudomonas aeruginosa .
Keyphrases
- multidrug resistant
- acinetobacter baumannii
- klebsiella pneumoniae
- pseudomonas aeruginosa
- drug resistant
- gram negative
- mental health
- healthcare
- cystic fibrosis
- single cell
- electronic health record
- molecular docking
- dengue virus
- high throughput sequencing
- single molecule
- escherichia coli
- machine learning
- antibiotic resistance genes
- microbial community
- deep learning
- data analysis
- molecular dynamics simulations