Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm.
Tetsuya KomatsuKenji OhyaKotaro SawaiJustice Opare OdoiKeiko OtsuAtsushi OtaToshihiro ItoMikihiko KawaiFumito MaruyamaPublished in: BMC research notes (2019)
We report here the draft genome sequences of M. peregrinum isolates 131_1 and 138 (6,451,733-bp and 6,479,047-bp). They were isolated from a pig with mesenteric lymph node lymphadenitis and from soil on the Japanese farm where the pig was reared. A sequence alignment identity score of 100% was obtained by in silico DNA-DNA hybridization of the two isolates, while 98.28% (isolate 131_1) and 98.27% (isolate 138) scores were recorded for hybridization with a human isolate. Both isolates carry arr-1, AAC(2')-Ib, RbpA, mtrA and tap drug-resistance genes. Isolates 131_1 and 138 carry 234 and 236 putative virulence genes, respectively. Therefore, environment M. peregrinum is potentially drug resistant and can cause swine lymphadenitis. Our data provides valuable new information for future studies on nontuberculous mycobacteria.
Keyphrases
- drug resistant
- genetic diversity
- genome wide
- single molecule
- lymph node
- multidrug resistant
- nucleic acid
- circulating tumor
- acinetobacter baumannii
- escherichia coli
- endothelial cells
- cell free
- pseudomonas aeruginosa
- dna methylation
- electronic health record
- gene expression
- genome wide identification
- squamous cell carcinoma
- current status
- machine learning
- neoadjuvant chemotherapy
- biofilm formation
- bioinformatics analysis