CSESA: an R package to predict Salmonella enterica serotype based on newly incorporated spacer pairs of CRISPR.

Lang YangXia ZhangYuqi LiuHao LiShaofu QiuPeng LiHongbin Song

Published in: BMC bioinformatics (2019)

CSESA is a convenient and useful tool for the prediction of S. enterica serotypes. The application of CSESA package can improve the efficiency of serotyping for S. enterica and reduce the burden of manpower resources. CSESA is freely available from CRAN at https://cran.r-project.org/web/packages/CSESA/ .

Keyphrases

genome wide
antimicrobial resistance
crispr cas
quality improvement
listeria monocytogenes
risk factors
gene expression
klebsiella pneumoniae
multidrug resistant